NCBI Mastery- A Beginner's Guide to Bioinformatics

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Udemy

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Online

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₹ 649 2299

Quick Facts

particular details
Medium of instructions English
Mode of learning Self study
Mode of Delivery Video and Text Based

Course and certificate fees

Fees information
₹ 649  ₹2,299
certificate availability

Yes

certificate providing authority

Udemy

The syllabus

Introduction to NCBI

  • NCBI Introduction 1
  • NCBI Introduction 2
  • NCBI Introduction 3
  • NCBI Introduction 4

Nucleotide Resources in NCBI

  • mRNA Sequence Retrieval
  • mRNA Sequence Analysis
  • Gene Database 1
  • Gene Database 2
  • Gene Database 3
  • Fasta Format
  • Genbank Format
  • Genbank Database
  • Refseq Database
  • Homologene Database
  • ORF Finder

Genome Resources in NCBI

  • Genome Database 1
  • Genome Database 2
  • Genome Database 3
  • Genome Database 4
  • Genome Data Viewer 1
  • Genome Data Viewer 2
  • Genome Data Viewer 3
  • Genome Assembly
  • Genome Reference Consortium

Variation Resources in NCBI

  • Introduction to SNPs
  • SNP Database (DbSNP) 1
  • SNP Database (DbSNP) 2
  • DbVAR Database 1
  • DbVAR Database 2
  • Clinvar Database 1
  • Clinvar Database 2
  • Clinvar Database 3
  • OMIM Database
  • MedGen Database 1
  • MedGen Database 2
  • GTR Database

Genomic Resources in NCBI

  • Biosystem Database
  • Bioproject Database
  • Biosample Database
  • SRA Database
  • Gene Expression 1
  • Gene Expression 2
  • Introduction To GEO Database
  • Introduction To GEO Dataset
  • Introduction To GEO Profiles
  • Sub Databases Of GEO 1
  • Sub Databases Of GEO 2
  • GEO Samples 1
  • GEO Samples 2
  • GEO Series
  • GEO Datasets 1
  • GEO Datasets 2
  • GEO Datasets 3
  • GEO Platforms
  • GEO Profiles 1
  • GEO Profiles 2
  • GEO2R 1
  • GEO2R 2

Protein Resources in NCBI

  • Protein Database
  • MMDB
  • Conserved Domain Search 1
  • Conserved Domain Search 2

Sequence Alignment in NCBI

  • Protein Blast 1
  • Protein Blast 2
  • Databases For Protein Blast
  • Choosing A Specific Blast Algorithm
  • Nucleotide Blast
  • Databases For Nucleotide Blast
  • Blastx
  • tBlastn
  • Primer Blast 1
  • Primer Blast 2
  • Primer Blast 3
  • Multiple Sequence Alignment-COBALT 1
  • Multiple Sequence Alignment-COBALT 2
  • Phylogeny Tree 1
  • Phylogeny Tree 2

Miscellaneous NCBI Resources

  • Pubchem Database
  • Pubmed Database
  • Taxonomy Database

{Bonus} UCSC Genome Browser

  • Introduction
  • Retrieve an Entire Genome
  • Table Browser tool
  • Retrieval & Annotation
  • Visualization of Genomic Data

{Bonus} Ensembl

  • Introduction to Ensembl
  • Retrieval of biological data Part 1
  • Retrieval of biological data Part 2
  • Retreival of Genome Assembly
  • Gene Analysis And Annotation Part 1
  • Gene Analysis And Annotation Part 2
  • Variation analysis Part 1
  • Variation analysis Part 2
  • Ensembl BLAST
  • Regulation tool of Ensembl
  • Comparative genomics tool

{Bonus} Uniprot

  • Introduction to UniProt database
  • Introduction to UniProtKB Part 1
  • Introduction to UniProtKB Part 2
  • UniProtKB Analysis Part 1
  • UniProtKB Analysis Part 2
  • UniProtKB Analysis Part 3
  • UniProtKB Analysis Part 4
  • Introduction to UniRef
  • UniRef Analysis
  • Introduction to Proteome database
  • Retrieval of an entire proteome
  • Introduction to UniParc
  • UniParc database analysis
  • UniProt BLAST Part 1
  • UniProt BLAST Part 2
  • ID mapping tool in UniProt
  • UniProt Align tool
  • Peptide search tool

{Bonus} Protein Data Bank (PDB)

  • Introduction to PDB
  • Protein analysis in PDB part 1
  • Protein analysis in PDB part 2
  • Visualization and analysis of the protein features in PDB
  • PDB Archive
  • How to search a ligand molecule from PDB
  • Alignment of PDB Sequences & Structures
  • Protein 3D Structure Visualization
  • Genomic discovery of protein structure
  • Protein symmetry

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