There are many colleges for doing M.Sc Chemistry programme. Each university/ college has different criteria to take the admission some of the colleges take teh admission through its own entrance & some of the colleges take the admission on the merit list.
Some of the colleges you can prefer :
University of Delhi
Jamia Millia University, Delhi
Banaras Hindu University
The admission is based on the merit list through its entrance test.
Good Luck!
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