Hello Siddhesh,
BTech in Mechatronics from Manipal University Jaipur is good! It is a new branch, so obviously it will take more time to make its mark. The Labs in the University are equipped with modern equipments. The Faculty is also well experienced.
Between Mechatronics and CSE, I cannot say which one is better. It purely depends on your interest. If you are totally into coding go for CSE and if you want to learn principles from different branches like Mechanical, Electronics, etc all in one branch go for Mechatronics.
All the best!
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