Based on previous years cut offs, you might have a chance at:

IIEST: Environment Engineering

NIT Calicut: Water Resource Engineering

VNIT Nagpur: Geotechnical Engineering

MANIT Bhopal: Green Technology

NIT Warangal: Remote Sensing and Geographic Information Systems

Now this is based on 2019 data and cut offs change every year depending on various factors. Please use our GATE College predictor:

Hello Rohit,
You have done really well in GATE 2020 which is clearly evident by the marks you scored and the rank you got.You have scored almost the double of the cutoff for Civil Engineering and you definitely can get M.E. in Civil Engineering in IITs.However,some IITs interview the candidate who has scored well and so admission to that particular IIT can be done after passing that interview.All in all if you are more lean towards Civil Engineering than Structural Engineering then you should pursue it because a good institute,which you have a great chances of getting,can provide you a good exposure and enhance your personality development.
To check your chance in other colleges,try our GATE college predictor by clicking the link below:
https://engineering.careers360.com/gate-college-predictor

JNEC Aurangabad

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