There is any option in Btech engineering (CSE) subjects to choose between chemistry , physics or maths ?
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B.Tech Computer Science Engineering course syllabus will differ from University to University, most of subjects might be same but difference in few subjects will be there.
Coming to your question, Mathematics, Chemistry and Physics subjects will be in 1 st year in both semesters as Mathematics - I, Mathematics - II, Physics - I, Physics - II, Chemistry - I and Chemistry - II, mostly all branches students need to face all these subjects. Few Colleges have Mathematics - III also, as we too had it. Names of the subjects might be slightly different like some Colleges have names like Applied Physics, Applied Mathematics, Mathematics, Engineering Physics, Physical Chemistry, Applied Chemistry instead of names given above.
We did not had chance to choose among these three subjects. We studied all the subjects. But not sure about other Universities.
For more information about B.Tech Computer Science Engineering branch, syllabus, career opportunities, job, salary, etc go through below mentioned link.
https://www.careers360.com/courses/b-tech-in-computer-science
May this information was helpful to you.
Good Luck!!
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