Hello Aswin
Well German universities offer a variety of courses,According to your preference
Some of the German universities that provide MS in Embedded Systems are
1.TU Chemnitz
2.University of Sttutgart(Infotech branch)
3.RWTH ACHEN
4.TU BERLIN
Well you can find many more public and private university on the official website
www.daad.de/en/ (//www.daad.de/en/)
In this website you can sort your preferences ,location,and subject
I hope this helps
Thanks and Regards
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