Hello Prabhaat,
Manav Rachna is definitely the better university even though it costs more and has lesser seats. Also as far as I know, Nirma University doesn't have Aeronautical Engineering under its B.tech courses, so there is no comparison to be made there.
You can check out top colleges for aeronautical engineering here : https://engineering.careers360.com/colleges/list-of-aeronautical-engineering-colleges-in-india
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