Hello!
Yes, you might face problems during admission procedure based on the college, but do check for which is the main document that the college accepts as Father's Identification. If you could specify the college name, I could help you out more. Even if not so, you should try calling up the main office of the college and asking them about this once for clarification.
Good luck!
Regular exam updates, QnA, Predictors, College Applications & E-books now on your Mobile